Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs73603059 chr20:6013041 T/C 0 177 25.67 22.63 2.93 KM Plot
PCPG rs73709607 chr8:135493878 C/T 0.000123 176 25.4 24.7 21.35 KM Plot
PCPG rs73735517 chr5:1528164 C/T 0.000137 170 25.77 20.13 13.17 KM Plot
PCPG rs737893 chr22:21288901 C/T 7.74E-5 177 12.93 31.47 25.2 KM Plot
PCPG rs73862898 chr3:129053693 A/G 0.000333 177 25.53 25.27 10.3 KM Plot
PCPG rs7390 chr12:6571699 G/A 0.000272 174 19.3 25.47 25.87 KM Plot
PCPG rs73945016 chr2:105670240 G/A 0.000333 172 26.22 25.17 20.2 KM Plot
PCPG rs73999972 chr17:80484429 G/A 4.81E-5 176 25.92 20.13 7.2 KM Plot
PCPG rs74038417 chr16:87338824 G/A 0.000123 173 23.03 31.2 3.17 KM Plot
PCPG rs74038420 chr16:87340013 G/A 0 173 23.43 32.32 2.22 KM Plot
PCPG rs740504 chr14:74426930 A/G 9.44E-6 177 25.17 30.63 7.4 KM Plot
PCPG rs740505 chr14:74426854 T/C 9.44E-6 177 25.17 30.63 7.4 KM Plot
PCPG rs74080519 chr12:30245141 A/C 7.14E-5 170 25.97 23.53 16.25 KM Plot
PCPG rs74129714 chr10:29845007 C/T 3.99E-11 178 25.53 22.05 10.3 KM Plot
PCPG rs74129716 chr10:29845397 T/C 3.99E-11 178 25.53 22.05 10.3 KM Plot